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SRX3206542: F4C1-1200dpi
1 ILLUMINA (Illumina MiSeq) run: 3.9M spots, 763.2M bases, 391.2Mb downloads

Submitted by: (FDA)
Study: hepatitis A virus Raw sequence reads- Nucleotide variations of Hepatitis A virus in culture and clinical samples detected by NGS
show Abstracthide Abstract
In this study, we developed and validated with pyrosequencing, a model of SNP detection on Hepatitis A virus with NGS. Point mutations in serially passage HAV HM175 clone 1 strain cultured in FRhK4 cells and a wide type HM175 positive stool sample were investigated. This project will be helpful for identifying potential multiple viruses (quasispecies) contamination on a single food item.
Sample: E48S2
SAMN07688444 • SRS2532358 • All experiments • All runs
Organism: Hepatovirus A
Library:
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: PolyA
Layout: PAIRED
Spot descriptor:
forward101  reverse

Runs: 1 run, 3.9M spots, 763.2M bases, 391.2Mb
Run# of Spots# of BasesSizePublished
SRR60611053,905,977763.2M391.2Mb2017-09-29

ID:
4514445

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